Algorithmic Genomics
Peeps actively working on algorithms and data structures for omics data. NOTE: This list started off-hand, based on ppl I see actively on this platform, and is certainly highly incomplete. If you think you belong here, let me know!
Created by
@robp.bsky.social
@npmalfoy.bsky.social
@jltsiren.bsky.social
Researcher at UCSC Genomics Institute. Space-efficient data structures and pangenome graphs.
@brinda.eu
‖ Permanent Researcher / INRIA Start. Faculty @ INRIA Rennes 🇫🇷 ‖ BioInfo/CompBio: algorithms, genomics, pathogens & rapid diagnostic of antibiotic resistance《 https://brinda.eu | https://github.com/karel-brinda 》
@meneton.bsky.social
RNA, Evolutionary Biology, Machine Learning, and ancient history. Building evolutionary ML models. Cambridge, UK
@suinlee.bsky.social
Paul G. Allen Endowed Professor in the Allen School of Computer Science & Engineering at the University of Washington. Interested in AI/ML, computational biology, and AI in medicine. https://suinlee.cs.washington.edu/
@jonbelyeu.bsky.social
Bioinformatics scientist at PacBio, previously Illumina. I develop software tools in Rust and Python for genome analysis. https://orcid.org/0000-0001-5470-8299
@rayanchikhi.bsky.social
@pierrepeterlongo.bsky.social
Inria Senior researcher. Head of the https://team.inria.fr/genscale/ at Inria and Irisa. Algorithmics for sequencing data analyses, genomics and metagenomics.
@shunhuahan.bsky.social
Bioinformatics Scientist at Illumina. I work on finding challenging variants. Views are my own. https://orcid.org/0000-0002-8605-7547
@stevensalzberg.bsky.social
Bloomberg Distinguished Professor of BME, CS, and Biostats at Johns Hopkins Univ., tennis player, @StevenSalzberg1 on Twitter, lab: salzberg-lab.org, Substack blog: stevensalzberg.substack.com
@martamele.bsky.social
computational biologist and Group Leader of the Trascriptomics and Functional Genomics Lab at the Barcelona Supercomputing Center
@tfenne.bsky.social
Bioinformatician, Leader, Founder @fulcrumgenomics.bsky.social https://www.fulcrumgenomics.com
@denizgoekbuget.bsky.social
@uofcalifornia.bsky.social researcher studying the interplay of epigenetic gene regulation and DNA replication governing genomic stability and cell fate in development and disease.
@jlsteenwyk.bsky.social
Omics & Software Eng 🧬👨🏽💻 | UC-Berkeley 🐻👨🏽🔬 | Current LSRF HHMI Awardee🎓 | HHMI Gilliam Alumn🧑🎓 https://linktr.ee/jlsteenwyk 🔗🌲 jlsteenwyk.com 🔗📍
@francescafinotello.bsky.social
Assistant Professor leading the Computational Biomedicine Group at the University of Innsbruck • Data scientist at the Digital Science Center (DiSC) • Precision medicine and cancer immunotherapy • Mother 🧬🖥️ https://computationalbiomedicinegroup.github.io/
@natproach.bsky.social
Bad opinion haver, leftist, scientist, bioinformatics PhD, Rust lang enthusiast, Python begrudging-acceptor, in that order.
@kezc.bsky.social
Lecturer in cancer bioinformatics at Cardiff University. https://github.com/kcleal
@apoetsch.bsky.social
Computational Biologist at TU Dresden. Interested in how genomes encode their own stability.
@robert.bio
Co-founder at https://omgenomics.com. Creator of https://42basepairs.com, https://sandbox.bio, https://biowasm.com, https://levelupwasm.com. Bioinformatics, genomics. About me: https://robert.bio
@stiles.io
Genetic, research, and software engineer looking to make friends. Creator of Poly, an open source Go package for engineering DNA 🧬 Let's engineer weird little guys together. github.com/bebop/poly 📍San Francisco
@bkaminow.bsky.social
PhD student working at the intersection of ML and drug discovery in the Chodera Lab he/him
@smllmp.bsky.social
Clinical Microbiology #Bioinformatics @ Karolinska Hospital | PhD alumn http://pharmb.io | Systems thinking, Reproducibility, #SciWorkflows scipipe.org | Exploring ideas in genomics algorithms & more. Married to Emebet. Dad. Sinner saved by grace.
@mfansler.bsky.social
Postdoc in Cvejic Group, BRIC, Københavns Universitet. PhD from Mayr Lab at Sloan Kettering Institute. Reproducible research enthusiast. Conda Forge R Team. Creator of scUTRquant.
@johanneskoester.bsky.social
Professor for Bioinformatics and Computational Oncology University of Duisburg-Essen Author of Snakemake, founder of Bioconda
@ivirshup.bsky.social
Software engineer at CZI, https://scverse.org steering council, check out my https://github.com/ivirshup
@fhormozd.bsky.social
Associate Professor @ UC-Davis | Former Senior Director @ Exai Bio | Computational Biology, ML/AI, Genomics, RNA, Cancer
@sergeynurk.bsky.social
Principal Bionformatician @nanopore. Ex: Postdoctoral fellow @ NIH; Researcher @ CAB. Views are my own; #StandWithUkraine Support Ukraine!
@structbioinfo.bsky.social
Sr. Asst Prof SASTRA Univ | Computational Biologist | YIM2024 organizer | Editor: CSBJ, BMC Bioinfo | Spl issue Ed: Biophys J | He/Him.
@davisjmcc.bsky.social
Head, Bioinformatics and Cellular Genomics Lab, St Vincent's Institute of Medical Research, Melbourne. Stats, AI/ML, bioinformatics, genomics, single-cell. https://www.svi.edu.au/researchers/dr-davis-mccarthy/
@lmweber.bsky.social
Assistant Professor of Biostatistics, Boston University. Statistical genomics, genomic data science, open science, R programming https://lmweber.org/
@omgenomics.com
Co-founder OMGenomics Labs. Creator of Circa https://circa.omgenomics.com, Ribbon, YouTube.com/omgenomics. Worked on DeepVariant+DeepConsensus at Google.
@pashadag.bsky.social
Algorithmic Bioinformatics Researcher and Teacher. Posts about research results and educational/mentorship topics (for details, see http://bit.ly/380vX22).
@sergek.bsky.social
Scientist at NHGRI/NIH. Mapping complete genomes, finished a couple, working on more 🐮🐟🐒. Posts are my own opinion.
@jianma.bsky.social
Ray and Stephanie Lane Professor of Computational Biology at CMU School of Computer Science. https://www.cs.cmu.edu/~jianma/
@rafalab.bsky.social
Applied statistician. I tweet data-driven observations, data science educational materials, academic research updates, and the occasional joke.
@torstenseemann.bsky.social
Microbial bioinformatics, genomics, software, clinical and public health microbiology More details at https://tseemann.github.io
@sherlockpholmes.bsky.social
Statistician,Mother,Prof,Grandmother(she/her)🇫🇷🇵🇹🇺🇸🧪. 🖋️with @wkhuber.bsky.social:Modern Statistics for Modern Biology (https://www.huber.embl.de/msmb/) #stats,#rstats.OSS,arXiv, microbial ecology,cytof,multi-omics,Bioconductor:phyloseq, DADA2
@const-ae.bsky.social
Postdoc at UCL with James Reading. Previously at EMBL working with Wolfgang Huber. Biostats, R, cancer immunology
@wkhuber.bsky.social
Statistician, Computational Biologist R | Bioconductor | Images are data https://www.huber.embl.de Textbook: Modern Statistics for Modern Biology https://www.huber.embl.de/msmb/ (with @sherlockpholmes.bsky.social)
@mikelove.bsky.social
Genetics, bioinformatics, comp bio, statistics, data science, open source, open science!
@stephaniehicks.bsky.social
Associate Professor of Biostatistics and Biomedical Engineering at Johns Hopkins. stephaniehicks.com
@sedlazeck.bsky.social
@anshulkundaje.bsky.social
Genomics, Machine Learning, Statistics, Big Data and Football (Soccer, GGMU)
@aaronquinlan.bsky.social
Origins and consequences of genome mutation; software for genomic discovery. Prof. and Chair of Human Genetics at U. of Utah. https://www.genetics.utah.edu/ http://quinlanlab.org
@dcjones.bsky.social
Computational biologist / computer scientist at Fred Hutchinson Cancer Center
@jnalanko.bsky.social
Postdoc in computer science and bioinformatics from Finland. Various writings in English and Finnish: https://blog.jnalanko.net. Also on Mastodon: https://genomic.social/@jnalanko
@yannponty.bsky.social
Bioinformatics researcher (CS PhD) • #RNA enthusiast • AI-skeptic but rational • Employed by #CNRS/#Polytechnique but views mine
@imartayan.bsky.social
PhD student in algorithmic bioinformatics at @bonsaiseqbioinfo.bsky.social. Interested in randomized algorithms and space-efficient data structures https://igor.martayan.org
@braphael.bsky.social
Graduate Class of 1991 Professor of Computer Science, Princeton University
@jermp.bsky.social
Assistant Prof. of CS at Ca' Foscari University of Venice. Indexing, Data Compression, Algorithms.
@mohsenzakeri.bsky.social
Postdoctoral Fellow at Johns Hopkins University, Computational Biology ❤️ www.mohsenzakeri.com
@armintoepfer.com
Husband. Parent. Dr sc @ETH. Bioinformagician. Father of @PacBio HiFi. C++ Purist. Geek. Digital Artist. Electronic music. Speaks in memes. Opinions are my own!
@moonlight.bio
Interested in the molecular patterns of carcinogenesis, adventure racing, bioinformatics, and hand-rolled pasta. Professional crud & stuff wrangler, aspiring artisanal software author.
@curiouscoding.nl
PhD on high troughput bioinformatics @ ETH Zurich; IMO, ICPC, Xoogler, Rust, road-cycling, hiking, wild camping, photography
@jbonfield.bsky.social
Walker, archer, and volunteer woodland warden by weekend, and bioinformatics software engineer and general geek by weekday. My favourite prime is 15551, my favourite colour is, obviously, octarine, and I love nothing more than being immersed in nature.
@yoann.bsky.social
Bioinformatics and Computer Science account of Yoann Dufresne. Scientist at @pasteur.fr . Alternative controleur game dev account : @collectifartefact.bsky.social Personal account : @docteursid.bsky.social
@ekimb.bsky.social
🇹🇷. PhD student in algorithmic bioinformatics @MIT. Visiting @Broad. Skeets(?) in TR/EN, views my own.
@johnm.bsky.social
Bioinformatics tools developer at Australia’s Centre for Population Genomics. Will edit GA4GH specifications for food. New Zealander fairly recently returned after a decade in the U.K.
@fulcrumgenomics.com
We provide specialized bioinformatic services to advance your technology and the understanding of human disease. https://www.fulcrumgenomics.com
@dnbaker.bsky.social
Computational genomics, with focus on indexing + search, data re-use, and scalable algorithms. C++/Rust enthusiast, hardware/algorithms. Johns Hopkins PhD, prior ARUP Laboratories and PacBio. Currently building GPU-accelerated platform at Roche.
@shenwei356.bsky.social
Associate professor of Bioinformatics at Chongqing Medical University, China. Lab: https://mbio.info Personal: http://shenwei.me/ http://shenwei356.bsky.social
@alexisbattle.bsky.social
Professor at Johns Hopkins Biomedical Engineering, Director Malone Center for Engineering in Healthcare, Interim Co-Director Data Science and AI Institute
@coxtonyj.bsky.social
Bioinformatics, string algorithms, DNA sequence analysis. Formerly Solexa/Illumina, now bioinformatics consulting at genomerics.com https://www.linkedin.com/in/coxtonyj/
@magdoll.bsky.social
Product manager @PacBio / RNA / bioinformatics / aerialist & pole dancer / opinions are my own and do not reflect views of my employer
@bluegenes.bsky.social
Genomics/metagenomics, bioinformatics, open science. Asst Researcher @ UC Davis, remote from San Diego. Budding rustacean. Formerly: @Scripps_Ocean, @Stanford. Nature lover and book fiend. she/her.
@themaklin.bsky.social
I do statistics, bacterial (meta)genomics and bioinformatics software development. Researcher @ University of Oslo
@byuhobbes.bsky.social
@holtjma.bsky.social
Staff scientist at @PacBio; formerly @hudsonalpha; avid gamer; opinions are my own
@raw937.bsky.social
UNC Charlotte Assistant Professor in Bioinformatics and Genomics. Computational molecular synthetic virologist. Github - github.com/raw-lab Website - rawlab.org
@ksahlin.bsky.social
Assistant Professor at the Department of Mathematics, Stockholm University, and a Scilifelab Fellow. Algorithms, Modeling, Transcriptomics, Genomics. Amateur runner 5000m 18:48 | 10k 37:40 | HM 1:28:34 | M 3:39:06
@benedictpaten.bsky.social
Professor of Biomolecular Engineering at the University of California, Santa Cruz; Associate Director, UC Santa Cruz Genomics Institute
@snystrom.bsky.social
Data science, genomics, software development. Formerly: Eukaryotic gene regulation, phage, graph genomes. On hiatus building distributed systems. snystrom.github.io
@jimshaw.bsky.social
Postdoc at Dana-Farber and Harvard Med with Heng Li (@lh3lh3.bsky.social). Prev: UBC / UofT. I like thinking about computational biological sequence analysis and its applications to metagenomics. https://jim-shaw-bluenote.github.io
@camillemrcht.bsky.social
Researcher in @BonsaiSeqBioinfo Lille, France. Bioinformatics, data-structures for DNA/RNA.
@geoffjentry.bsky.social
Noted curmudgeon. Software, biotech, food & drink. All opinions my own, no one else wants them anyways.
@mishakolmogorov.bsky.social
Tenure-track Stadtman Investigator at NIH/NCI. I like computational/cancer/metagenomics. The views are my own.
@milot.bsky.social
Open source methods for #metagenomics with @martinsteinegger.bsky.social Seoul National University 🇰🇷 | former Söding Lab MPI-NAT 🇩🇪 | http://mstdn.science/@milotmirdita
@khmiga.bsky.social
Associate Professor of Biomolecular Engineering at the University of California, Santa Cruz; Associate Director, UC Santa Cruz Genomics Institute
@nilshomer.com
I write software for Biologists. Founder @fulcrumgenomics, Bioinformatician, Computer Scientist, Coder, Father of 2xGirls. Opinions are my own.
@yanasafonova.bsky.social
Assistant Professor at Penn State. Previously: JHU, UCSD, UofL. Computational immunogenomics & studies of adaptive immunity. https://sites.google.com/view/yana-safonova Stand up for science!
@elinork.bsky.social
Scientist & artist. Prof at UMass Chan Med School & Broad Institute. Rice U alum. Founder of Zoonomia & DarwinsArk.org. Wants your dog’s DNA. And your cat’s! 🇸🇪🇳🇿🇺🇸
@haesleinhuepf.bsky.social
Biomedical Computer Vision & Language Models, scads.ai / Leipzig University, also NFDI4BIOIMAGE, NEUBIAS/GloBIAS, GPUs, AI, ML 🔬🖥️🚀 views:mine
@treangen.bsky.social
Computational tools for microbial genomics, metagenomics, & public health 🧬🦠🔎 Associate Professor of Computer Science, Rice University 🦉💻 Treangen Lab website: www.treangenlab.com
@dr-alphalyrae.bsky.social
AI for Life Sciences & Digital Health at NVIDIA | trained as a scientist from JGI, UW & UC Berkeley | views are all mine
@niema.net
Associate Teaching Professor of Computer Science at UC San Diego, Bioinformatician by training, SD-raised. https://niema.net
@benlangmead.bsky.social
Associate Professor of Computer Science @ JHU. https://www.langmead-lab.org/ https://www.youtube.com/BenLangmead
@martinsteinegger.bsky.social
Developing data intensive computational methods • PI @ Seoul National University 🇰🇷 • #FirstGen • he/him • Hauptschüler
@mikeschatz.bsky.social
Bloomberg Distinguished Professor at Johns Hopkins University. http://schatz-lab.org
@timtriche.bsky.social
Chief cook & bottlewasher, http://trichelab.org/ Posts may contain trace quantities of blood🩸, chromatin 🧬, and stats 🧮 CV: https://scholar.google.com/citations?user=AOoIO74AAAAJ